Happenings 21 Jan 2008 So, I just found out that I’m teaching this semester, which is a comfort (money will come in, and we can eat) and a pain (I am going to Arizona in March, so we will have to sort out some guest lectures or something). The subject is philosophy of the life sciences, but the blurb covers topics I wouldn’t have put up myself: This course looks at some of the philosophical issues arising out of the study of the life sciences-primarily biology & ecology. These issues include problems associated with the theory of evolution such as: (i) recent philosophical debate on the unit of selection; (ii) How is it possible for altruism to evolve? (iii) the role of Simpson’s paradox in accounting for such apparently maladaptive traits?; (iv) how applicable are evolutionary explanations to sociology and epistemology. The course will also look at various philosophical issues in ecology such as the problem of classifying endangered species according to their risk of extinction, & the quantification of uncertainty that’s appropriate for various management decisions. The unit should be of interest to students of philosophy & students of biology. For an introductory class I think Simpson’s paradox is a bit complex, and I find the conservation biology stuff theoretically uninteresting and mostly a matter of social ethics. Also, the fellow who normally teaches is a whiz at decision theory, and mathematically based stuff that I’m not. But I’ll manage. The good thing about teaching this subject is that it extends my paid employment to mid-year… In the matter of Bad Journalism in Science Press Releases, there have been a few doozies lately. One of them is this silly piece. From one study about the evolution of one characteristic (vulva morphology) in one group of organisms, and a character that rather obviously goes to fitness (without that there vulva, ain’t no roundworms gonna be born), the press release writer leaps across mighty gaps of logic to argue that this proves that evolution is deterministic, not chance. What it actually shows is a bit less dramatic than that, but we have to have the drama in the headline to get it covered, don’t we? Another it this: actually it’s a very interesting study, and the Eureka Alert isn’t badly written, but there’s enough drama there to get the ignorant journo and her editor interested. What’s the drama? Well it turns out Darwin is wrong, see? Researchers from the University of Sheffield, as part of an international team, have discovered the secret of why dark sheep on a remote Scottish Island are mysteriously declining, seemingly contradicting Darwin’s evolutionary theory. Except he’s not. First the study. The Soay sheep are unique in that they are a less derived breed than on most northern islands and Scotland in general, and that the individual sheep have been tracked now, with a couple of intermissions, since the 1960s. Yes, that’s right, individual sheep. Births, deaths, paternity and maternity, general phenotype, and recently, genetics are being used to test and learn about the nature of population genetic dynamics in a real world situation. One of the researchers gave a lovely talk about a year ago at UQ. So the results of this particular study indicate something that on the face of it seems counterintuitive. A dark fleece has been correlated with higher survival in Soay sheep. That is, it correlates with other genes for larger body size and hence resilience against the nasty winter storms that kill off so many. Now they found that the dark fleece is not spreading in the population. That’s the apparent paradox. What’s actually happening, as this excellent summary by Yann Klementidis explains, is that when individuals are homozygous for the linked alleles, their fitness declines, while when they are heterozygous their fitness increases, somewhat like the effects of sickle cell anemia in malarial regions is for humans. One copy, increased local fitness; two, deleterious. This is enough to prevent the alleles from going to fixation (that is, taking over that locus throughout the entire population). Is that contrary to Darwinian evolution? Not at all. I mentioned the sickle cell case – that’s been in the textbooks for over fifty years. As Yann says “This result demonstrates the importance of understanding the genetic basis of fitness variation when making predictions about the microevolutionary consequences of selection.” Indeed. I have a complaint to make about the use of Linnaean ranks in paleontology. Soon. Writing grants… Administrative Evolution General Science Social evolution
Evolution Philosophy and evolution 19 May 2009 Over the past 50 years or so, there have been many attempts to give a general metaphysics of evolution, ranging from axiomatisation (by Mary Williams, at the height of the “theories are axiomatic systems” period*), to “logical necessity” cases (such as Lewontin’s three conditions for natural selection), to “units of selection” arguments, most closely associated with George Williams and RIchard Dawkins. In each of these, and other, attempts, there has always been the presumption that there is a fixed hierarchy of ranks and units in biology. These are the “forms” of biology: replicators, interactors, species, genes, cells, and so on. The odd thing about this is that as people were asserting that essentialism is dead (see the article on species linked above), they were being essentialists about concepts and units and ranks. Ernst Mayr, for example, who asserted that species individually (the species taxon, as he put it) have no essences, nevertheless asserted that the concept of species (the species category) did so. He was an essentialist about the species concept. Likewise, the gene centrism of a Dawkins is essentialist about the replicator concept. And so on. Now one of the reasons why people adopted the hard and fast categories is that they usually were specialists in groups, such as mammals, birds or insects, where these categories had a real purchase. This is often referred to, mostly by botanists, as the “fur and feathers” or “vertebrate” or just “animal” bias. But another is just that they were seeking what used to be called the Characteristica Universalis, or the most general universal and formal language for the domain in question. It is a general disposition of those in the west to do this (and despite suggestions to the contrary, I cannot see how one might apply the Eastern metaphysics fruitfully in the domain of science). It is a constant temptation to try to ground ideas in unchanging and agential categories. We like species because they do something. We like replicators because they are the ultimate doers. These categories apply in ways that make sense of both the world, and our need for constancy. Coherence is not gone. Until you stop focussing on the “obvious” cases, and start paying attention to as many as you can find. I have what I call the “esoteric method”: look for cases that don’t fit the current categories and then go look and see if that is more general than you might think. For example, in his 1942, Ernst Mayr referred to nonsexual organisms as “aberrant” when discussing the adequacy of his “new” “biological” species concept (122, 129). Today we know that not only are most organisms not sexual, which would mean most of them are not arrayed in species, but that the sexuality of species even in the small twig of the phylogenetic tree that is metazoans is not constant: many groups have either got hybridisation, or asexuality, or both. Nor is gene exchange confined to sexual species – between species gene flow is common, and even among asexuals lateral transfer is frequent. In fact the sort of species Mayr expected to exist are rare, except among some groups of vertebrates (oddly, the group Mayr studied, birds, often hybridise). Over the past 50 years these essentialistic categories have become harder and harder to support empirically, as we have learned of more and more exceptions. Some, such as John Dupré, have argued for a pluralism of conceptions in biology due to the polytypic nature of the instances to which these categories are applied. It’s just a brute fact of biology that none of these categories are universal, and so biologists must avail themselves of whatever conception works in a particular case (to make this more concrete: species are sexual isolates when that works, but in, say, bacteria, they are phenetic clusters or something else). Some years ago, I published an idea that I think might be the resolution to this (2003) in which I argued that species is like any other property of organisms, something that has evolved in its own way. The reason there is no universal notion of species for the same reason there is no universal notion of leg: species, like legs, are the outcome of evolution. In other words, these kinds themselves evolve. This applies also to other apparently universal aspects of biology: genes, or rather replicators, cells, individuals, and so on. It is not the case that, as Dupré thinks, that anything goes, but that there are evolved modalities, as I called them – ways of being whatever it is that we are trying to understand. This applies not only to the organisms and their traits, but to the kinds of organisms, and even to the kinds of kinds. Taxa, units, ranks, entities, systems – all these are evolved, and so to understand what it means to be, say, a bird species or a eukaryote gene, you need to understand the evolutionary relations of that group. Last year, Peter Godfrey Smith published an interesting book that argues that the sole precondition for a Darwinian perspective on the world is that there are populations. Because we are disposed to see biology in terms of agency, we want agents, but that is, PGS holds, a remnant of the oldthink of teleology that Darwinism replaced. I think he’s well on the right track, although he still thinks that this means we cannot have types or classes. I think that classes are merely local and evolved. We are in a reading group covering his book right now, so as we work through it, I’ll probably add some more. One thing I do want to say now, though, is that there is a prior problem knowing what a population is. For instance, to know that an ensemble of individuals form a population, you need, minimally, to show they are of the same species because you don’t get a population that spreads across two or more species, unless they are causally connected reproductively (in which case they might be classed as the same species anyway). Moreover, you already need to know the sort of object/organism that counts as an individual for that group in order to identify it as a population. This is not always so easy, in the case of colony organisms. While PGS is rightly arguing that there are no ranks or special units, only populations (which comprise individuals that have heredity and ecological differences, leading to evolution**), it seems to me that he still requires there to be some sort of types or equivalence classes, even if there are no universal kinds of types. In part, this is something that comes out of the death of the essentialism story: it is often assumed that if one abandons essentialism, one loses access to any kind of equivalence class in biology (i.e., natural kinds; we aren’t worried about conventional classes or functionally defined classes), and that is what PGS assumes too. But it is my view that biology always uses types, which are defined or rather ostended by identifying an exemplar and then looking for clusters of properties. This is what PGS says we should be doing, but he does not see these as types. I do. By finding these clusters of properties (and even more the underlying developmental traits and heredity), we are then able to determine what a population is, and what individuals are, by a process of iterative induction (start with a case that is presumably exemplary and then make inductive generalisations from that until they fail). What bothers people who think in terms, not of binaries as Chris Schoen suggested, but of absolute levels or entities that do not change, is that evolution leaves us gasping and dealing with vague boundaries, shifting kinds and so on. I feel for them, but it is really biology that does this, and always has. What really is novel about evolutionary thinking is that we know not only that the appearances change, but that the forms, and the forms of forms also change. However hard to come to grips with, we must. And the solution to this vagueness is phylogenetic thinking. If you know where a species or an organism is placed on an evolutionary network (allowing for the moment that the tree topology sometimes fails), then you know what sorts of sorts it will fall into, or if you find that it doesn’t, that sets up an interesting research project. More as it occurs to me. * Williams was a student of the originator of the Axiomatic Method for the sciences, Joseph H. Woodger. ** Evolution includes a lack of change by stabilising selection or developmental entrenchment (which I think may be a subset of the former). We need not presume that selection always causes change (but if there is a lack of change, I think we should presume that is due to selection). Read More
Administrative On inspiration 26 Nov 2010 Being as I am swamped with boring, but remunerative, things to do, I haven’t blogged for a while. So another reflection. As I age, I find that I am no longer struck by the vivacity of books. When I was in my twenties, and discovering new fields and ideas for… Read More
Ethics and Moral Philosophy Arnhart on Hitler’s Ethic 9 Sep 2009 Larry Arnhart has a pretty solid review of Richard Weikert’s latest anti-Darwin guilt-by-association text linking Darwin to Hitler. However, I think he gives too much away. Read More
Err, is “Souay” anywhere near “Soay”? If you’re teaching levels of selection, you should read Chapter 1 of Levels of Selection in Evolution (if you haven’t already). Bob
Err, is “Souay” anywhere near “Soay”? If you’re teaching levels of selection, you should read Chapter 1 of Levels of Selection in Evolution (if you haven’t already). Bob
Err, is “Souay” anywhere near “Soay”? If you’re teaching levels of selection, you should read Chapter 1 of Levels of Selection in Evolution (if you haven’t already). Bob
Err, is “Souay” anywhere near “Soay”? If you’re teaching levels of selection, you should read Chapter 1 of Levels of Selection in Evolution (if you haven’t already). Bob
Err, is “Souay” anywhere near “Soay”? If you’re teaching levels of selection, you should read Chapter 1 of Levels of Selection in Evolution (if you haven’t already). Bob
Everyone’s a critic. Soay… ASU – fellow blogger John Lynch at Stranger Fruit and his colleagues are organising a workshop on the philosophy (and science, etc.) of phylogenetic taxonomy.
I wish I could get into one of your classes. Philosophy of science (in any form) is not even into the sciences curriculum over at my university!
Is there an echo in here? I had a fixed term contract until the end of February, but I extended it with some teaching (halftime) in last semester. The guy who was going to teach life sciences became head of department, so I got it as the nearest thing to a philosopher of biology here. That extended me out to July. I’m teaching cognitive sciences again in second semester, and the uni just kicked in some funds from a departed postdoc’s appointment to see me through to the end of the year now. So if I don’t get a job or grant (or both) by new year’s, then I’ll be out on the street. I do love certainty in my life. I may make the Flash files from the lectures available, if they turn out to be any good. But I won’t know that until I write the lectures and deliver them…
hey John, glad you aren’t out on the street (as yet anyway *frown*). let me know how things go with your course – i’m teaching a philbio course sem II and am similarly adverse to teaching complicated math. hope all is well, R
hey John, glad you aren’t out on the street (as yet anyway *frown*). let me know how things go with your course – i’m teaching a philbio course sem II and am similarly adverse to teaching complicated math. hope all is well, R
You’re teaching cog-sci? Cool! My local uni has an Institute of Cognitive Science. Perusing the Philosophy dept faculty pages, it seems that about half of them are phil-of-mind types who are affiliated with the ICS. However, the other half look to be pomo weenies — have to avoid that lot if I ever wind up going there ;-).