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Do we need, and can we get, a single authoritative list of species?

Last updated on 25 Aug 2020

In a recent paper, Garnett et al. [2020] have set up what they refer to as the principles for creating a single authoritative list of all known species. This is required because there are no such singular lists (one was attempted in the 1990s, and another in the naughties) to which people can refer, and this causes, among other things, miscommunications. The reason it does that, is because species are continuously renamed, reassigned to new genera, or reclassified as synonymous with other, older species names.

The authors (including Stijn Conix, an up-and-coming philosopher of science) have proposed the following ten rules:

  1. The species list must be based on science and free from nontaxonomic considerations and interference.
  2. Governance of the species list must aim for community support and use.
  3. All decisions about list composition must be transparent.
  4. The governance of validated lists of species is separate from the governance of the naming of species.
  5. Governance of lists of accepted species must not strain academic freedom.
  6. The set of criteria considered sufficient to recognise species boundaries may appropriately vary between different taxonomic groups but should be consistent when possible.
  7. A global list must balance conflicting needs for currency and stability by having archived versions.
  8. Contributors need appropriate recognition.
  9. List content should be traceable.
  10. A global listing process needs both to encompass global diversity and to accommodate local knowledge of that diversity.

These are fairly obvious and straightforward in their justifications, but they are either administrative or procedural. I would like to discuss the problems of such a list here.

First of all is the delimitation problem. Species are identified as separate from other such groups in various ways. Some use genomic clustering algorithms; some use mitochondrial or other organelle DNA sequences at a particular locus (“Barcoding”), and the traditional methods of eyeballing or analysing anatomy are also still in use. However, for there to be a “universal” list, there need to be universally adopted criteria, which are, if possible, objective (or nearly so). And such criteria are not in evidence. There are conventions, of course, but their application depends upon such factors as the sub discipline or group being classified, the collegial practices of that institution or region, and the experience of the taxonomist.

A recent paper on fungal species concepts illustrates the issues. Fungi have some kind of sexual cycle, but not all of them, and neither DNA sequences nor morphology give universal and unambiguous results. Lücking, et al. [2020] say:

Hawksworth (1996: 32) pragmatically defined fungal species as “… groups of individuals separated by inheritable character discontinuities and which it is useful to give a species name to …”. Since inheritable character discontinuities can only be assessed by simultaneous analysis of phylogenetic relationships and clade-based phenotype variation, this definition is largely congruent with ‘phylogenetic taxon species’ [Italics in original].

Fungi are no exception to the notion that species have individual evolutionary histories, and so aspects of their genealogical coherence, reproductive isolation and phenotypic distinctiveness may differ. This implies that there is no single, universal approach to species delimitation and consequently for species identification.

The “utility” in such definitions refers to both the ease of identification by taxonomic experts [on that group of organisms] and the ease of use by the “end-users” of taxonomy, who must identify and verify the species. Lücking et al. present a figure:

Screen Shot 2020 07 13 at 6 43 05 pm
They note:

The dependence of fungal identification on species concepts, delimitation and recognition approaches, and the importance of the verification process. Taxonomic specialists typically elaborate the first four steps up to the production of identification tools, whereas taxonomic users apply identification tools and perform verification. The verification process is generally neglected but is of crucial importance for accurate identifications

And this is all good, except that I have one issue here (well, several, as will become clear).

Species are used, and have a role in how we employ, enjoy and explore the natural world. They are terms of art on which many items of knowledge are hung. But, as Lücking et al. note, there remains no single useful, coherent, exclusive and universal notion of what a species is, and in my view, there never will be. So a singular list of species would be, at best, useful fiction in some domains of the evolutionary tree, and a complete waste of time in others. Moreover, any description of a species must be held hostage to the empirical data, and so species are redescribed, divided, lumped, and moved around the tree on a regular basis. Given that we would be talking about millions of species, the administrative effort involved in maintaining that list, and moreover revising citations of that list, would be enormous. As taxonomy gets almost no direct funding in biology as it is, this would take many researchers and their grants away from other aspects of their work.

Why do we even need to have species when talking about biology? There are a few reasons, in my opinion. The first and primary is administrative and tradition: we have used the idea of species as the basal kinds of life for around 500 years. All the literature is cast in that way. Communication is based upon the names and records of species. Education of specialists uses species names and records. This, of course, has no force as knowledge, except in the generic sense of knowing the details of a practice. These species names are not evidence in scientific research, any more than a library record is evidence in the topics covered by books. It is utility, not knowledge.

Another reason is that we think we must have an ontology in each scientific discipline. That is to say, each field must have basic units. This is a view that I consider unfounded. If one adopts a different approach (say a process rather than an objectual or substantial ontology), the notion of base units becomes otiose. I’m not suggesting this is the case in all science, of course. Physics I think still has basic units. But it is the case in biology, and in all the other special sciences.

The danger of unit-ontologies in the special sciences is that we become so wedded to the units that we treat them as evidence in inference, and this leads to taking conclusions from constructed categories (“hypotheses” or “impressions”) as probative in our research. And this is how essentialism becomes malign. Class concepts like “race”, “rank” and so on are formed by the acceptance of what are constructed ideas, usually from “common sense” culture, as facts about the universe. In short, this is a subtle form of anthropomorphism, of thinking that we (our categories) are the measure of the universe.

Science begins in and returns to data. Even allowing that data and ideas in science are somehow irredeemably social (which I do think) and that we are subject to confirmation biases and various kinds, the goal in science must be to construct these categories based upon as much data as we can afford to get. In short, I am an empiricist. I think science should be too.

References

Garnett, Stephen T., Les Christidis, Stijn Conix, Mark J. Costello, Frank E. Zachos, Olaf S. Bánki, Yiming Bao, et al. 2020. “Principles for Creating a Single Authoritative List of the World’s Species.” PLOS Biology 18 (7): e3000736. https://doi.org/10.1371/journal.pbio.3000736.

Lücking, Robert, M. Catherine Aime, Barbara Robbertse, Andrew N. Miller, Hiran A. Ariyawansa, Takayuki Aoki, Gianluigi Cardinali, et al. 2020. “Unambiguous Identification of Fungi: Where Do We Stand and How Accurate and Precise Is Fungal DNA Barcoding?” IMA Fungus 11 (1): 14. https://doi.org/10.1186/s43008-020-00033-z.

4 Comments

  1. Interesting, John. The same problem exists for students of human language and culture. Some years ago my teacher and colleague, the late David Hays, undertook to review and synthesize cross cultural literature on cultural complexity. He ran up against the same problem. You have a bunch of researchers writing about a variety of different societies and cultures, but no one has a definitive list so you don’t know when people are talking about the same or different cultures/societies/languages.

    The boundary problem is real. You start at some village somewhere in the Balkans, on the Indian subcontinent, in the New Guinea highlands, wherever. The people speak a certain language and have a sense of who they are. You start walking and come to another village 5, 10, 33, 50, a 100 miles away. The language is similar and people here know people from your first village, even marry with them. You keep walking and come to a third village, where things are like the second, but a little different, and rather more different from the first. You can see where this goes. At what point are we speaking a different language in a different society with a different culture from where we started?

    Hays told me that the anthropologists dealt with the problem by consulting with the linguists. And the linguists, alas, dealt with it by consulting the anthropologists. This procedure is not a recipe for intellectual clarity.

  2. Michael Fugate Michael Fugate

    A periodic table of the species?
    Having described a few species, this would not be high on my priority list. An individual species is in flux – changing all the time and in the end ephemeral with a birth and death – trying to pin it down is near impossible. Other posts like the one on human exceptionalism have touched on this.

    One thing that interests me currently is the cultural interaction over “native” and “non-native species” – the language of invasion and purity how it relates to human societies. Language as always is the foundation; we struggle with how to symbolize reality.

  3. A C Harper A C Harper

    If you are looking to create a ‘utility’ rather than an instrument for driving research, then perhaps it should be created rather like Wikipedia. Crowd sourced, crowd curated and with an intention to improve accuracy. Wikipedia has its issues, but they are not the same issues as those of a definitive list. Mostly because I agree that a ‘definitve list’ will never be written.

  4. davidlduffy davidlduffy

    There is already one such utility http://www.catalogueoflife.org.

    Does “biodiversity” have any meaning in the absence of a species concept? In terms of “environmental services” necessary for human survival, can we construct nice new ecologies without having interchangeable units that allow service to continue over time without continual intervention? In environmental ethics, are we being sentimental in a bad way if we support particular genealogies against extinction? I was looking up posterity the other day, which turned out to be “the aggregate number of persons who are descended from an ancestor”.

    In terms of legislative protection, apparently subspecies and populations in particularly unique environments can be recognized in many jurisdictions, and the suggestion seems to be that legislation can point to a particular scientific paper, allowing for possible later changes in taxonomy. If one wants to support such populations, one might need to at the very least have a table of genetic relatedness to other populations
    eg https://link.springer.com/article/10.1186/s12983-016-0163-z
    which can be simplified into a list of biological species, if one is not a fungus.

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